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Wrapper function of TasselGenotypePhenotype class for GenotypePhenotype combined data
Source:R/genotype_phenotype_function.R
readGenotypePhenotype.Rd
Creates a Java GenotypePhenotype object which is used for
TasselGenotypePhenotype
object construction. The Java
GenotypePhenotype object is created via an intersect
method
from TASSEL.
Arguments
- genoPathOrObj
a path to a genotype file (e.g. VCF, hmp, etc.) or TASSEL Genotype Obj
- phenoPathDFOrObj
a path, a data frame of phenotypic data, or TASSEL Phenotype Obj
- ...
Additional parameters to be sent to the function. Currently, if an R data frame object is passed, additional parameters will also need to be entered for this process. These parameters are derived from the
readPhenotypeFromDataFrame
function. Mainly,taxaID
is required. If you would like to specify depth retention and position sorting in Genotype Tables from a path, indicate them here. SeereadGenotypeTableFromPath()
for more detail.