R interface for Archaeopteryx interactive tree viewer

This function acts as a wrapper for TASSEL's interface to the Archaeopteryx Java tree Viewer.

Usage

treeJavaApp(tasObj, clustMethod = c("Neighbor_Joining", "UPGMA"))

Arguments

tasObj

An object of class TasselGenotypePenotype.

clustMethod

What clustering method should be used? Current options are UGMA and Neighbor_Joining. Defaults to Neighbor_Joining.

Value

Returns a Java-based visualization application.