Create a TASSEL kinship matrix — kinshipMatrix • rTASSEL

This function will calculate a kinship matrix using TASSEL's Kinship plugin and respective parameters.

Usage

kinshipMatrix(
  tasObj,
  method = "Centered_IBS",
  maxAlleles = 6,
  algorithmVariation = "Observed_Allele_Freq"
)

tasObj: An object of class TasselGenotypePenotype.
method: A Kinship method. Defaults to Centered_IBS. Other options include Normalized_IBS, Dominance_Centered_IBS, and Dominance_Normalized_IBS.
maxAlleles: Maximum number of alleles. Can be within the range of 2 to 6.
algorithmVariation: Algorithm variation. If Dominance_Centered_IBS is selected, users can switch between Observed_Allele_Freq and Proportion_Heterozygous.

Returns a `TasselDistanceMatrix` object.