This function will filter R objects of
TasselGenotypePhenotype class containing genotype tables.
The parameters for this function are derived from TASSEL's
FilterTaxaBuilder plugin.
Usage
filterGenotypeTableTaxa(
tasObj,
minNotMissing = 0,
minHeterozygous = 0,
maxHeterozygous = 1,
taxa = NULL
)Arguments
- tasObj
An object of class
TasselGenotypePenotype.- minNotMissing
Minimum proportion of sites not unknown to pass this filter. Value can be between 0.0 and 1.0.
- minHeterozygous
Minimum proportion of sites that are heterozygous. Value can be between 0.0 and 1.0.
- maxHeterozygous
Maximum proportion of sites that are heterozygous. Value can be between 0.0 and 1.0.
- taxa
Vector of taxa IDs (as character) to subset. Defaults to
NULL.