LDResults Class

An S4 class that stores the results of a linkage disequilibrium (LD) analysis produced by linkageDiseq. The object contains the full pairwise LD table together with the parameters used to generate it.

Prints a compact summary of an LDResults object.

Usage

# S4 method for class 'LDResults'
show(object)

Arguments

object

An LDResults object.

Slots

results

A data.frame containing the pairwise LD statistics. Expected columns include Locus1, Position1, Locus2, Position2, R^2, DPrime, pDiseq, and N, among others.

ldType

A single character string indicating the LD calculation type: "All" or "SlidingWindow".

windowSize

A single numeric value for the sliding-window size. NA_real_ when ldType is "All".

hetCalls

A single character string indicating how heterozygous calls were handled: "missing", "ignore", or "third".

See also

linkageDiseq, plotLD